This program uses the Work Queue system to distributed tasks among processors. After starting sand_align_master, you must start a number of work_queue_worker(1) processes on remote machines. The workers will then connect back to the master process and begin executing tasks. The actual alignments are performed by sand_align_kernel(1) on each machine.
|Port number for work queue master to listen on. (default: 9123)|
|Maximum number of candidates per task. (default is 10000)|
|Extra arguments to pass to the alignment program.|
|Enable debugging for this subsystem. (Try -d all to start.)|
|Work Queue fast abort multiplier.(default is 10.)|
|Select port at random and write it out to this file.|
|Send debugging to this file.|
|-v||Show version string.|
|-h||Show help text.|
% work_queue_worker localhost 9123 & % sand_align_master sand_align_kernel mydata.cand mydata.cfa mydata.ovlTo speed up the process, run more work_queue_worker() processes on other machines, or use condor_submit_workers(1) or sge_submit_workers(1) to start hundreds of workers in your local batch system.